Publications

Peer-reviewed article publications

2024

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    Tensorial tomographic Fourier Ptychography with applications to muscle tissue imaging
    Shiqi Xu, Xi Yang , Paul Ritter , Xiang Dai , Kyung Chul Lee , Lucas Kreiss , Kevin C Zhou , Kanghyun Kim , and 3 more authors
    Advanced Photonics, 2024
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    Digital staining in optical microscopy using deep learning - a review
    Lucas Kreiss , Shaowei Jiang , Xiang Li , Shiqi Xu, Kevin C Zhou , Alexander Mühlberg , Kyung Chul Lee , Kanghyun Kim , and 3 more authors
    PhotoniX, 2024
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2023

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    Imaging across multiple spatial scales with the multi-camera array microscope
    Mark Harfouche , Kanghyun Kim , Kevin C Zhou , Pavan Chandra Konda , Sunanda Sharma , Eric E Thomson , Colin Cooke , Shiqi Xu, and 3 more authors
    Optica, 2023
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    Multi-modal imaging using a cascaded microscope design
    Xi Yang , Mark Harfouche , Kevin C Zhou , Lucas Kreiss , Shiqi Xu, Pavan Chandra Konda , Kanghyun Kim , and Roarke Horstmeyer
    Optics Letters, 2023
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2022

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    Gigapixel imaging with a novel multi-camera array microscope
    Eric E Thomson , Mark Harfouche , Kanghyun Kim , Pavan C Konda , Catherine W Seitz , Colin Cooke , Shiqi Xu, Whitney S Jacobs , and 3 more authors
    Elife, 2022
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    Optical imaging and spectroscopy for the study of the human brain: status report
    Hasan Ayaz , Wesley B Baker , Giles Blaney , David A Boas , Heather Bortfeld , Kenneth Brady , Joshua Brake , Sabrina Brigadoi , and 3 more authors
    Neurophotonics, 2022
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    A multiple instance learning approach for detecting COVID-19 in peripheral blood smears
    Colin L Cooke , Kanghyun Kim , Shiqi Xu, Amey Chaware , Xing Yao , Xi Yang , Jadee Neff , Patricia Pittman , and 3 more authors
    PLOS Digital Health, 2022
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    Tensorial tomographic differential phase-contrast microscopy
    Shiqi Xu, Xiang Dai , Xi Yang , Kevin C Zhou , Kanghyun Kim , Vinayak Pathak , Carolyn Glass , and Roarke Horstmeyer
    In 2022 IEEE International Conference on Computational Photography (ICCP) , 2022
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    Transient motion classification through turbid volumes via parallelized single-photon detection and deep contrastive embedding
    Shiqi Xu, Wenhui Liu , Xi Yang , Joakim Jönsson , Ruobing Qian , Paul McKee , Kanghyun Kim , Pavan Chandra Konda , and 3 more authors
    Frontiers in neuroscience, 2022
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    Imaging Dynamics Beneath Turbid Media via Parallelized Single-Photon Detection
    Shiqi Xu, Xi Yang , Wenhui Liu , Joakim Jönsson , Ruobing Qian , Pavan Chandra Konda , Kevin C Zhou , Lucas Kreiß , and 3 more authors
    Advanced Science, 2022
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    Quantitative Jones matrix imaging using vectorial Fourier ptychography
    Shiqi Xu, Xiang Dai , Xi Yang , Kevin C Zhou , Carolyn Glass , Pavan Chandra Konda , and Roarke Horstmeyer
    Biomedical optics express, 2022
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    Increasing a microscope’s effective field of view via overlapped imaging and machine learning
    Xing Yao , Vinayak Pathak , Haoran Xi , Amey Chaware , Colin Cooke , Kanghyun Kim , Shiqi Xu, Yuting Li , and 3 more authors
    Optics Express, 2022
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2021

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    Quantized Fourier ptychography with binary images from SPAD cameras
    Xi Yang , Pavan Chandra Konda , Shiqi Xu, Liheng Bian , and Roarke Horstmeyer
    Photonics Research, 2021
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    Fast and sensitive diffuse correlation spectroscopy with highly parallelized single photon detection
    Wenhui Liu , Ruobing Qian , Shiqi Xu, Pavan Chandra Konda , Joakim Jönsson , Mark Harfouche , Dawid Borycki , Colin Cooke , and 3 more authors
    APL Photonics, 2021
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2020

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    Fourier ptychography: current applications and future promises
    Pavan Chandra Konda , Lars Loetgering , Kevin C Zhou , Shiqi Xu, Andrew R Harvey , and Roarke Horstmeyer
    Optics express, 2020
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    Real-time colorectal cancer diagnosis using PR-OCT with deep learning
    Shiqi Xu, Yifeng Zeng , William C Chapman Jr , Shuying Li , Zahra Alipour , Heba Abdelal , Deyali Chatterjee , Matthew Mutch , and 1 more author
    Theranostics, 2020
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2019

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    Improving DOT reconstruction with a Born iterative method and US-guided sparse regularization
    Shiqi Xu, KM Shihab Uddin , and Quing Zhu
    Biomedical optics express, 2019
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    Regularized fourier ptychography using an online plug-and-play algorithm
    Yu Sun , Shiqi Xu, Yunzhe Li , Lei Tian , Brendt Wohlberg , and Ulugbek S Kamilov
    In ICASSP 2019-2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) , 2019
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